Weekly Roundup – Jan, 17 2016

This week’s weekly roundup!

Special Thanks to Jonathan Dekhtiar (@born2data) for visiting PocketCluster channel and contributing examples!

Examples

Seal
Hadoop-based suite of tools for processing NGS data.

Neural-nets-are-weird
Source code for the article, How to trick a neural network into thinking a panda is a vulture

Toolsets

Mango
Visualization tools for genomic data.

MANGO

Qc-metrics
Read and variant metrics, useable for pipeline quality control purposes.

 

Libraries

Abracad
A Clojure library for de/serializing Clojure data structures with Avro.

Splout-db
A web-latency SQL spout for Hadoop.

Pydoop
A Python MapReduce and HDFS API for Hadoop.

Bigdatagenomics-Utils
General (non-omics) code used across BDG products. Apache 2 licensed.

ContEst
Spark implementation of the ContEST contamination estimation algorithm.

PacMin
Assembler for PacBio reads.

Avocado
A Variant Caller, Distributed.


You can find a lot more tools, frameworks and libraries at PocketCluster Index. Go check it out! Looking into adding your repo? tweet to @stkim1!

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